conduitR

Lifecycle: experimental

Overview

conduitR is an R package that provides tools for metaproteomics analysis using conduit and conduit-GUI. It offers a comprehensive suite of functions for processing, analyzing, and visualizing metaproteomics data. These functions are designed to be used in conjunction with the conduit and conduit-GUI packages, or independently for custom analyses.

Features

Getting Data

Data Processing

Statistical Analysis

Visualization

Miscellaneous

Dependencies

The package requires the following R packages: - QFeatures for proteomics data management - limma for statistical analysis - ggplot2 for visualization - tidyr and dplyr for data manipulation - Additional packages for specific functionalities (see DESCRIPTION file)

Installation

You can install the development version of conduitR from GitHub:

r, eval = FALSE # install.packages("devtools") devtools::install_github("baynec2/conduitR")

Usage

This is a work in progress. The package documentation and vignettes will be updated with detailed examples demonstrating: - Data import and preprocessing - Statistical analysis workflows - Visualization techniques - Integration with conduit and conduit-GUI - Best practices and recommendations

Stay tuned for updates!